AlignmentsEncoding
Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the alignments plugin. View source.
The alignments displays' encoding, the channels the reads paint through.
Example usage
{ type: 'LinearAlignmentsDisplay', encoding: { color: 'tags.HP' } }Config slots
A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.
| Slot | Description |
|---|---|
| color AlignmentsColor | The read fill: { value: "steelblue" } paints every read, "strand" a read dimension's own vocabulary and "tags.HP" a SAM tag. |
Related links
- Config guide: Alignments track