SyntenyEncoding
Auto-generated from the config schema in the source — see the config guide for concepts. Built into JBrowse core. View source.
The linear synteny, dotplot and circular views' encoding: the channels
every track in the view paints its alignments through.
Example usage
{ type: 'LinearSyntenyView', encoding: { color: 'query', opacity: 0.4 } }Config slots
Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.
| Slot | Description |
|---|---|
| color SyntenyColor | Each alignment's color: { value }, or a field and the scale its values map through, with a key. |
| opacity SyntenyOpacity | Each alignment's opacity: a number, or a field read into opacities. |
Related links
- Docs: URL query parameter API