AssembliesMixin
Note: this document is automatically generated from @jbrowse/mobx-state-tree objects in our source code. See Core concepts and intro to pluggable elements for more info
Also note: this document represents the state model API for the current released version of jbrowse. If you are not using the current version, please cross reference the markdown files in our repo of the checked out git tag
Links
Docs
Adds sessionAssemblies (admin-aware, persisted-with-session assemblies) and
temporaryAssemblies (used for ad-hoc read-vs-ref style assemblies).
AssembliesMixin - Properties
property: sessionAssemblies
// type signature
IArrayType<ConfigurationSchemaType<{ aliases: { type: string; defaultValue: never[]; description: string; }; sequence: AnyConfigurationSchemaType; refNameColors: { type: string; defaultValue: never[]; description: string; }; refNameAliases: ConfigurationSchemaType<...>; cytobands: ConfigurationSchemaType<...>; displ...
// code
sessionAssemblies: types.array(assemblyConfigSchemasType)
property: temporaryAssemblies
// type signature
IArrayType<ConfigurationSchemaType<{ aliases: { type: string; defaultValue: never[]; description: string; }; sequence: AnyConfigurationSchemaType; refNameColors: { type: string; defaultValue: never[]; description: string; }; refNameAliases: ConfigurationSchemaType<...>; cytobands: ConfigurationSchemaType<...>; displ...
// code
temporaryAssemblies: types.array(assemblyConfigSchemasType)
AssembliesMixin - Actions
action: addSessionAssembly
// type signature
addSessionAssembly: (conf: AnyConfiguration) => { [x: string]: any; } & NonEmptyObject & { setSubschema(slotName: string, data: Record<string, unknown>): Record<...> | ({ ...; } & ... 2 more ... & IStateTreeNode<...>); } & IStateTreeNode<...>
action: addAssembly
// type signature
addAssembly: (conf: AnyConfiguration) => void
action: removeAssembly
// type signature
removeAssembly: (name: string) => void
action: removeSessionAssembly
// type signature
removeSessionAssembly: (assemblyName: string) => void
action: addTemporaryAssembly
used for read vs ref type assemblies.
// type signature
addTemporaryAssembly: (conf: AnyConfiguration) => { [x: string]: any; } & NonEmptyObject & { setSubschema(slotName: string, data: Record<string, unknown>): Record<...> | ({ ...; } & ... 2 more ... & IStateTreeNode<...>); } & IStateTreeNode<...>
action: removeTemporaryAssembly
// type signature
removeTemporaryAssembly: (name: string) => void