MafEncoding
Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the maf plugin. View source.
The MAF display's encoding, the channels its aligned cells paint through
and the field its rows' bars show.
Example usage
{ type: 'LinearMafDisplay', encoding: { color: 'identity', y: 'identity' } }Config slots
A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.
| Slot | Description |
|---|---|
| color MafColor | What each aligned cell paints: mismatch, base, identity, chromosome or codon, and the scale its values map through. |
| y MafY | The value a row's bar height shows: identity, or unset for none. |
Related links
- Config guide: MAF track