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RowColor

Auto-generated from the config schema in the source. See the config guide for concepts. Built into JBrowse core. View source.

scale.unknown: '' colors no row but those rows.colors pins: the "None" of the Color rows by menu and dialog.

rows.color, the row displays' rows colored by an attribute: one ordinal color channel on the row axis. field names the row attribute whose values take the colors, a samplesTsv column or a subtrack's group, and scale.domain and scale.range pair its values with CSS colors, the rest each taking a palette color. Under name, the default, each row is its own value: the palette (scale.range, then the row palette) deals one color per row, and only where the rows share one panel, a wiggle overlay, since stacked rows are identified by their labels; scale.unknown is the color every row takes instead, '' for none. A color pinned on one row is rows.colors, which wins over this, so under name this takes no scale.domain. A string is the field.

Each display paints a row's color on the element that identifies a row: the quantitative display's plot, or the tint beside its label while a score gradient paints; the multi-row feature display's blocks; the variant display's label tint; the MAF display's label tint, over the adapter's samples[].color; the mark display's label tint, over a listed source's color. Not encoding.color, which on wiggle and the mark display paints by value.

Example usage

{ type: 'LinearVariantDisplay', rows: { color: 'population' } }
{
  type: 'LinearVariantDisplay',
  rows: {
    color: {
      field: 'population',
      scale: { domain: ['EUR', 'AFR'], range: ['#1f77b4', '#ff7f0e'] },
    },
  },
}
{
  type: 'LinearMultiRowFeatureDisplay',
  rows: { color: { scale: { unknown: '' } }, colors: { mom: '#b2182b' } },
}

Config slots

A setting written to it replaces it whole: a member left out returns to its default. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

Slot Description
scale.unknown
maybeColor		 The color every row the scale leaves out takes; '' for none.
field
string = 'name'		 The row attribute whose values take the colors, or name, each row its own value. Under name with no scale.unknown, stacked rows keep only a file's own colors and the colors rows.colors pins, since the palette deals only where the rows share one panel.
scale
RowColorScale sub-schema		 Which color each value of the field takes. Under name it takes no domain: a row's own color is rows.colors.
scale.domain
"the field's values that get a color, in order; none under name, where a row's own color is rows.colors"
 The field's values that get a color, in order; none under name.
scale.range
'"" colors no row but those rows.colors pins: the menu's None. A color: every row the scale leaves out takes it. Unset: under name the palette deals a color per row where the rows share one panel, and under an attribute each value deals the next palette color; a row left without one keeps the color its file gives it'
 The CSS color each value in domain takes, in the same order; past them, the palette the other values deal from.