Skip to main content

SequenceFeatureDetails

Auto-generated from the @jbrowse/mobx-state-tree model in the source. See the developer guide for concepts. Built into JBrowse core. View source.

User preferences for the sequence readout under a feature's details, seeded from and written straight back to localStorage. The model is not snapshotted and does not read the tree, so an instance is cheap and needs no lifecycle: a holder that only sometimes shows a panel (e.g. a track's right-click dialog) creates one when it opens and keeps none otherwise.

BaseFeatureWidget holds one as sequenceFeatureDetails, which is where a caller changing the readout reaches these actions.

Volatiles

Member Description
showCoordinatesSetting
ShowCoordinatesMode
intronBp
number
upDownBp
number
upperCaseCDS
boolean
charactersPerRow
number		 how wide a row of the readout is. Rows exist only while coordinates are shown — without them the panel wraps to its container — so this is what the labels step by, and the line width of the FASTA exported from that state.
recentModes
("cdna" | "cds" | "gene" | "gene_collapsed_intron" | "gene_updownstream" | "gene_updownstream_collapsed_intron" | "genomic" | "genomic_sequence_updownstream" | "protein")[]
 the sequence types picked in any panel, most recent first; resolveMode shows the first one a feature offers

Getters

Member Description
showCoordinates
boolean

Actions

Member Description
setUpDownBp
(f: number) => void
setIntronBp
(f: number) => void
setUpperCaseCDS
(f: boolean) => void
setCharactersPerRow
(f: number) => void
setShowCoordinates
(f: ShowCoordinatesMode) => void
setMode
(f: "cdna" | "cds" | "gene" | "gene_collapsed_intron" | "gene_updownstream" | "gene_updownstream_collapsed_intron" | "genomic" | "genomic_sequence_updownstream" | "protein") => void