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SequenceFeatureDetails

Auto-generated @jbrowse/mobx-state-tree API for the current JBrowse release — see pluggable elements for concepts. Built into JBrowse core. View source.

User preferences for the sequence readout under a feature's details, seeded from and written straight back to localStorage. Nothing here is snapshotted or reads the tree, so an instance is cheap and needs no lifecycle: a holder that only sometimes shows a panel (e.g. a track's right-click dialog) creates one when it opens rather than carrying it around.

BaseFeatureWidget holds one as sequenceFeatureDetails, which is where a caller changing the readout reaches these actions.

Volatiles

MemberDescription
showCoordinatesSetting
showCoordinatesSetting: parseShowCoordinatesMode(
        localStorageGetItem(${p}-showCoordinatesSetting),
      )
intronBp
intronBp: localStorageGetNumber(${p}-intronBp, 10)
upDownBp
upDownBp: localStorageGetNumber(${p}-upDownBp, 100)
upperCaseCDS
upperCaseCDS: localStorageGetBoolean(${p}-upperCaseCDS, true)
charactersPerRow
charactersPerRow: clampCharactersPerRow(
        localStorageGetNumber(${p}-charactersPerRow, 100),
      )
how wide a row of the readout is. Rows exist only while coordinates are shown — without them the panel wraps to its container — so this is what the labels step by, and the line width of the FASTA exported from that state.

Getters

MemberDescription
showCoordinates
boolean

Actions

MemberDescription
setUpDownBp
(f: number) => void
setIntronBp
(f: number) => void
setUpperCaseCDS
(f: boolean) => void
setCharactersPerRow
(f: number) => void
setShowCoordinates
(f: ShowCoordinatesMode) => void